![]() Repeats, or where the gene was single exon and evidence of a functional multi-exon paralog was found elsewhere in the Pseudogenes were calculated by lookingĪt genes with a large percentage of non-biological introns (introns of <10bp), where the gene was covered in Small ncRNAs were obtained using a combination of BLAST and Infernal/RNAfold. Transcripts based on evolutionary distance, experimental evidence for the source data and quality of the alignments. For each candidate gene region, a selection process was applied to choose the most appropriate set of The gene annotation process was carried out using a combination of protein-to-genome alignments, annotation mappingįrom a suitable reference species and RNA-seq alignments (where RNA-seq data with appropriate meta data were publiclyĪvailable). This fishĬan sometimes be found in the aquarium trade. This cichlid is a mouthbrooder and the female broods the eggs in her mouth for about three weeks. It feeds on aufwuchs, a surface layer of mostly algal material that grows on The zebra mbuna (Maylandia zebra) is a species of cichlid endemic to Lake Malawi in Africa. The N50 length for the contigs is 1,407,748 while the scaffold N50 is 32,660,920. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. ![]() From these sequences, 22 chromosomes have been built. The assembly is on chromosome level, consisting of 2,331 contigs assembled into 1,690 scaffolds. The M_zebra_UMD2a assembly was submitted by Broad Institute on April 2018. ![]()
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